PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088595001
Common NameGSBRNA2T00088595001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 265aa    MW: 29380.9 Da    PI: 6.783
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088595001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.78.2e-3871071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC  +Cv+apyf+++q +++fa++h++FGasn +kll++lp ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +
  GSBRNA2T00088595001   7 PCGACKFLRRKCIYGCVFAPYFCHDQgASHFAAIHQVFGASNASKLLSQLPMQDRCEAAITIYYEAQARLQDPIYGCVAHIFSLQQQVVN 96 
                          7*************************89************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+l+ lk++
  GSBRNA2T00088595001  97 LQAQLEILKQQ 107
                          *******9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.5446108IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-357105IPR004883Lateral organ boundaries, LOB
PfamPF134562.4E-8203255No hitNo description
CDDcd062222.43E-8204253No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCIY GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSQLPMQD  60
RCEAAITIYY EAQARLQDPI YGCVAHIFSL QQQVVNLQAQ LEILKQQATQ SMMTTDTPSL  120
ENPNYYRDTK LQQLQQSLDL HRHHNRHHQD RSLDTESDSD LKNIMTSYSE LDQHLNTFNQ  180
YHNGGNDVLS ASFGKNSSSN GVATLIRAIN NDAQVKEIFG IVKDIQELSS VFVEISFAHV  240
PRSSNVEADR LAKLALSVSV VSNP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088595001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738481e-138AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142064.11e-136PREDICTED: LOB domain-containing protein 17
RefseqXP_013747417.11e-136PREDICTED: LOB domain-containing protein 17-like
SwissprotQ9SLB64e-97LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A078IAR00.0A0A078IAR0_BRANA; BnaA04g24480D protein
STRINGBra016876.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-88LBD family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]